#LyX 2.0 created this file. For more info see http://www.lyx.org/ \lyxformat 413 \begin_document \begin_header \textclass beamer \begin_preamble % Include only certain frames - this speeds up compilation % The frames to be included need to be labeled, by using ERT % as [label=LABELNAME] (no backslashes or {}) %\includeonlyframes{currentt} % To make a printable handout (one page per frame), pass % the handout option to the doc class (Layout menu) % For good fonts in PDFs, use pslatex fonts (Layout menu) % Colors and symbols \usepackage{latexsym} \usepackage{color} % Display covered items in transparent form (as opposed % to not showing them at all) \newcommand{\coveredinvisible}{ \setbeamercovered{invisible} } \newcommand{\coveredvisible}{ \setbeamercovered{highly dynamic} } % Choose default setting here: \coveredvisible \newcommand{\ps}{\vspace{-1.5mm} } % Theme configuration. I've basically built a custom theme out of % Warsaw, adding infoline and changing the nav. symbol bar % Warning: the commands below are order-sensitive! % load the infolines theme, b/c I want the headline Warsaw % uses (split), but the footline from infolines. % In the document body, these will be deactivated for the title and % turned on later \useoutertheme{infolines} % Main theme \usetheme{Warsaw} % Adjust the color for the center (title) box to be that of % infolines, which Warsaw changes \setbeamercolor*{title in head/foot}{parent=palette secondary} % Define a minimal set of navigation symbols \defbeamertemplate*{navigation symbols}{minmal} {% \hbox{% \hbox{\insertframenavigationsymbol} \hbox{\insertdocnavigationsymbol} \hbox{\insertbackfindforwardnavigationsymbol}% }% } % activate the minimal navbar \setbeamertemplate{navigation symbols}[minimal] %%%%% HACK %%%%% % I started getting errors because LyX is emmitting a color 'none' % call, which confuses xcolor. I'm defining 'none' to be black here. \definecolor{none}{cmyk}{0,0,0,1} %%%%% /HACK %%%%% \usepackage{url} \usepackage{listings} % A few colors to replace the defaults for certain link types \definecolor{orange}{cmyk}{0,0.4,0.8,0.2} \definecolor{darkorange}{rgb}{.71,0.21,0.01} \definecolor{darkgreen}{rgb}{.12,.54,.11} \definecolor{gray}{rgb}{0.45, 0.45, 0.45} \definecolor{myteal}{rgb}{.26, .44, .56} \lstset{ language=python, frame=single, breaklines=true, basicstyle=\scriptsize \ttfamily, %numbers=left, numberstyle=\tiny, showstringspaces=false, keywordstyle=\color{blue}\bfseries\emph, commentstyle=\color{myteal}, stringstyle=\color{darkgreen}, identifyerstyle=\color{darkorange}, xleftmargin=3mm, } %----------------------------------------------------------------------------- % This helps prevent overly long lines that stretch beyond the margins \sloppy \end_preamble \options compress \use_default_options false \maintain_unincluded_children false \language english \language_package default \inputencoding auto \fontencoding global \font_roman palatino \font_sans lmss \font_typewriter lmtt \font_default_family default \use_non_tex_fonts false \font_sc false \font_osf false \font_sf_scale 100 \font_tt_scale 100 \graphics default \default_output_format default \output_sync 0 \bibtex_command default \index_command default \paperfontsize default \spacing single \use_hyperref false \papersize default \use_geometry true \use_amsmath 2 \use_esint 0 \use_mhchem 1 \use_mathdots 1 \cite_engine basic \use_bibtopic false \use_indices false \paperorientation landscape \suppress_date false \use_refstyle 0 \index Index \shortcut idx \color #008000 \end_index \secnumdepth 2 \tocdepth 2 \paragraph_separation indent \paragraph_indentation default \quotes_language english \papercolumns 1 \papersides 1 \paperpagestyle default \tracking_changes false \output_changes false \html_math_output 0 \html_css_as_file 0 \html_be_strict false \end_header \begin_body \begin_layout Standard \begin_inset ERT status open \begin_layout Plain Layout % disable the bottom bar for the title and outline pages \end_layout \begin_layout Plain Layout \end_layout \begin_layout Plain Layout \backslash setbeamertemplate{footline}{} \end_layout \end_inset \end_layout \begin_layout Standard \begin_inset ERT status open \begin_layout Plain Layout \backslash vspace*{-5mm} \end_layout \end_inset \end_layout \begin_layout Title IPython: tools for the lifecycle of research computing \begin_inset Argument status open \begin_layout Plain Layout IPython \end_layout \end_inset \end_layout \begin_layout Author Fernando \begin_inset space ~ \end_inset Pérez \begin_inset Newline newline \end_inset \family typewriter \size scriptsize @fperez_org \family default \size default \begin_inset Argument status open \begin_layout Plain Layout FP \end_layout \end_inset \begin_inset ERT status collapsed \begin_layout Plain Layout \backslash vspace{5mm} \end_layout \end_inset \begin_inset Newline newline \end_inset \family typewriter \series bold \size normal \begin_inset Flex URL status open \begin_layout Plain Layout http://ipython.org \end_layout \end_inset \end_layout \begin_layout Institute \begin_inset Note Note status open \begin_layout Plain Layout - Use the \backslash inst command only if there are several affiliations. \end_layout \begin_layout Plain Layout - Keep it simple, no one is interested in your street address. \end_layout \end_inset \begin_inset Argument status open \begin_layout Plain Layout UC Berkeley \begin_inset Note Note status open \begin_layout Plain Layout optional, but mostly needed \end_layout \end_inset \end_layout \end_inset \begin_inset ERT status collapsed \begin_layout Plain Layout \backslash vspace{5mm} \end_layout \end_inset \end_layout \begin_layout Date SciPy 2012 \begin_inset Newline newline \end_inset July 19, 2012 \begin_inset Argument status open \begin_layout Plain Layout 7/19/2012 \end_layout \end_inset \end_layout \begin_layout Standard \begin_inset Note Note status open \begin_layout Plain Layout If you have a file called "institution-logo-filename.xxx", where xxx is a graphic format that can be processed by latex or pdflatex, resp., then you can add a logo by uncommenting the following: \end_layout \end_inset \end_layout \begin_layout Standard \begin_inset ERT status collapsed \begin_layout Plain Layout % \backslash pgfdeclareimage[height=0.5cm]{institution-logo}{institution-logo-filename} \end_layout \begin_layout Plain Layout \end_layout \begin_layout Plain Layout % \backslash logo{ \backslash pgfuseimage{institution-logo}} \end_layout \end_inset \end_layout \begin_layout Standard \begin_inset Note Note status open \begin_layout Plain Layout The following causes the table of contents to be shown at the beginning of every Section. Delete this, if you do not want it. \end_layout \end_inset \end_layout \begin_layout Standard \begin_inset ERT status collapsed \begin_layout Plain Layout \backslash AtBeginSection[]{ \end_layout \begin_layout Plain Layout \end_layout \begin_layout Plain Layout \backslash frame{ \end_layout \begin_layout Plain Layout \end_layout \begin_layout Plain Layout \backslash frametitle{Outline} \end_layout \begin_layout Plain Layout \end_layout \begin_layout Plain Layout \backslash tableofcontents[currentsection] \end_layout \begin_layout Plain Layout \end_layout \begin_layout Plain Layout } \end_layout \begin_layout Plain Layout \end_layout \begin_layout Plain Layout } \end_layout \end_inset \end_layout \begin_layout Standard \begin_inset Note Note status open \begin_layout Plain Layout If you wish to uncover everything in a step-wise fashion, uncomment the following command: \end_layout \end_inset \end_layout \begin_layout Standard \begin_inset ERT status collapsed \begin_layout Plain Layout % \backslash beamerdefaultoverlayspecification{<+->} \end_layout \end_inset \end_layout \begin_layout Standard \begin_inset ERT status open \begin_layout Plain Layout % reactivate the footline \end_layout \begin_layout Plain Layout \end_layout \begin_layout Plain Layout \backslash setbeamertemplate{footline}[infolines theme] \end_layout \end_inset \end_layout \begin_layout BeginFrame The lifecycle of a scientific idea (the toy version) \end_layout \begin_layout Enumerate \color blue Individual \color inherit exploratory work \end_layout \begin_layout Enumerate \color blue Collaborative \color inherit development \end_layout \begin_layout Enumerate \color blue Production \color inherit work (HPC, cloud, \color blue parallel \color inherit ) \end_layout \begin_layout Enumerate \color blue Publication \color inherit (with \color red reproducible \color inherit results!) \end_layout \begin_layout Enumerate \color blue Education \end_layout \begin_layout Enumerate Goto 1. \end_layout \begin_layout Pause \end_layout \begin_layout AlertBlock \begin_inset ERT status open \begin_layout Plain Layout {The Problem with most tools} \end_layout \end_inset \end_layout \begin_deeper \begin_layout Standard Barriers and discontinuities in worfklow in between all the steps \end_layout \end_deeper \begin_layout BeginPlainFrame \end_layout \begin_layout Standard \align center \series bold \size largest \color blue IPython's goal: \end_layout \begin_layout Standard \align center \series bold \size largest \color blue Fluid transitions in all these steps \end_layout \begin_layout BeginPlainFrame \end_layout \begin_layout Standard \align center \series bold \size largest \color blue Demos \end_layout \begin_layout BeginFrame Important: The notebook format \end_layout \begin_layout Itemize JSON but version control-friendly \end_layout \begin_layout Itemize Easy for machine processing, \series bold fixable by hand if need be \series default . \end_layout \begin_layout Itemize Lots of 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height 95theight% \end_inset \end_layout \begin_layout BeginPlainFrame High-level parallel computing \end_layout \begin_layout FrameSubtitle Min Ragan-Kelley, Brian Granger \end_layout \begin_layout Standard \align center \begin_inset Graphics filename fig/ipython_dist_architecture.png lyxscale 50 width 90text% \end_inset \end_layout \begin_layout BeginPlainFrame \end_layout \begin_layout Standard \align center \series bold \size largest \color blue A growing ecosystem of applications \end_layout \begin_layout BeginPlainFrame Microsoft Visual Studio 2010 integrated console \end_layout \begin_layout FrameSubtitle Dino Viehland and Shahrokh Mortazavi; \begin_inset Flex URL status collapsed \begin_layout Plain Layout http://pytools.codeplex.com \end_layout \end_inset \end_layout \begin_layout Standard \align center \begin_inset Graphics filename fig/ipython_ms_visual_studio.png lyxscale 50 width 95page% \end_inset \end_layout \begin_layout BeginPlainFrame A vim client to control an IPython kernel/console \end_layout \begin_layout FrameSubtitle Paul Ivanov, \begin_inset Flex URL status collapsed \begin_layout Plain Layout https://github.com/ivanov/vim-ipython \end_layout \end_inset \end_layout \begin_layout Standard \align center \begin_inset Graphics filename fig/vim-ipython.png lyxscale 50 height 80theight% \end_inset \end_layout \begin_layout BeginPlainFrame Notebooks on Windows Azure Cloud \end_layout \begin_layout FrameSubtitle Shahrokh Mortazavi, B.G., F.P.: \begin_inset Flex URL status open \begin_layout Plain Layout http://bit.ly/JQeojD \end_layout \end_inset . \end_layout \begin_layout Standard \align center \begin_inset Graphics filename fig/azure-notebook.png lyxscale 30 height 90theight% \end_inset \end_layout \begin_layout BeginPlainFrame Star Cluster: IPython parallel+Notebook on Amazon EC2 \end_layout \begin_layout FrameSubtitle Justin Riley: \begin_inset Flex URL status collapsed \begin_layout Plain Layout http://web.mit.edu/star/cluster \end_layout \end_inset \end_layout \begin_layout Standard \align center \begin_inset Graphics filename fig/starcluster_overview.png lyxscale 50 width 95text% \end_inset \end_layout \begin_layout BeginPlainFrame One-click single notebook on Amazon EC2 \end_layout \begin_layout FrameSubtitle Carl Smith: \begin_inset Flex URL status open \begin_layout Plain Layout https://notebookcloud.appspot.com \end_layout \end_inset . \end_layout \begin_layout Standard \align center \begin_inset Graphics filename fig/notebookcloud.png lyxscale 30 width 100text% \end_inset \end_layout \begin_layout BeginPlainFrame Canopy: Enthought's new Python environment (EPD 8) \end_layout \begin_layout Standard \align center \begin_inset Graphics filename fig/canopy-ipython.png lyxscale 30 width 95text% \end_inset \end_layout \begin_layout BeginPlainFrame An Emacs Notebook Client! \end_layout \begin_layout FrameSubtitle Takafumi Arakaki: \begin_inset Flex URL status collapsed \begin_layout Plain Layout http://tkf.github.com/emacs-ipython-notebook \end_layout \end_inset . \end_layout \begin_layout Standard \align center \begin_inset Graphics filename fig/emacs_ein_notebook_simple_plot.png lyxscale 30 width 70text% \end_inset \end_layout \begin_layout BeginPlainFrame vIPer: a dedicated notebook client \end_layout \begin_layout FrameSubtitle Damián Avila: \begin_inset Flex URL status collapsed \begin_layout Plain Layout https://github.com/damianavila/vIPer \end_layout \end_inset \end_layout \begin_layout Standard \align center \begin_inset Graphics filename fig/vIPer.png lyxscale 30 height 80theight% \end_inset \end_layout \begin_layout BeginPlainFrame (Incomplete) Cast of Characters \end_layout \begin_layout Itemize \series bold \color red Brian Granger \series default - Physics, Cal State San Luis Obispo \color inherit \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \series bold \size small \color blue Min Ragan-Kelley \series default \color inherit - Nuclear Engineering, UC Berkeley \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \series bold \size small \color blue Matthias Bussonnier \series default \color inherit - Physics, Institut Curie, Paris \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \series bold \size small \color blue Jonathan March \series default \color inherit - Enthought \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \series bold \size small Thomas Kluyver \series default - Biology, U. Sheffield \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \series bold \size small Jörgen Stenarson \series default - Elect. Engineering, Sweden. \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \series bold \size small Paul Ivanov \series default - Neuroscience, UC Berkeley. \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \series bold \size small Robert Kern \series default - Enthought \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \series bold \size small Evan Patterson - \series default Physics, Caltech/Enthought \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \series bold \size small Brad Froehle \series default - Mathematics, UC Berkeley \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Stefan van der Walt - UC Berkeley \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small \color blue John Hunter \color inherit - TradeLink Securities, Chicago. \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Prabhu Ramachandran - Aerospace Engineering, IIT Bombay. \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Satra Ghosh- MIT Neuroscience \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Gaël \series bold \series default Varoquaux - Neurospin (Orsay, France) \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Ville Vainio - CS, Tampere University of Technology, Finland \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Barry Wark - Neuroscience, U. Washington. \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Ondrej Certik - Physics, U Nevada Reno \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Darren Dale - Cornell \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Justin Riley - MIT \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Mark Voorhies - UC San Francisco \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Nicholas Rougier - INRIA Nancy Grand Est \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \size small Thomas Spura - Fedora project \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout Itemize \color blue Many more! (~150 commit authors) \color inherit \begin_inset ERT status open \begin_layout Plain Layout \backslash ps \end_layout \end_inset \end_layout \begin_layout BeginPlainFrame Support \end_layout \begin_layout FrameSubtitle Thank you! \end_layout \begin_layout Itemize \series bold \color blue Enthought \series default \color inherit , Austin, TX: \series bold \color blue Lots! \end_layout \begin_layout Itemize \series bold \color blue Microsoft \series default \color inherit : WinHPC support, Visual Studio integration, Azure (thanks to \color blue Shahrokh Mortazavi \color inherit ). \end_layout \begin_layout Itemize \series bold \color blue DoD/DRC Inc \series default \color inherit : funding through Sept. 2012 (thanks to \color blue Jose Unpingco \color inherit and \color blue Chris Keees \color inherit ). \end_layout \begin_layout Itemize \color blue NIH \color inherit : via NiPy grant \end_layout \begin_layout Itemize \color blue NSF \color inherit : via Sage compmath grant \end_layout \begin_layout Itemize \color blue Google \color inherit : summer of code 2005, 2010. \end_layout \begin_layout Itemize \color blue Tech-X \color inherit Corporation, Boulder, CO: Parallel/notebook (previous versions) \end_layout \begin_layout Pause \end_layout \begin_layout Standard \align center \series bold \size largest \color blue We REALLY need more stable funding... \end_layout \begin_layout BeginPlainFrame Plug: Reproducibility in Computational and Experimental Mathematics \end_layout \begin_layout FrameSubtitle December 10-14 2012, Brown, Rhode Island. \begin_inset Flex URL status collapsed \begin_layout Plain Layout http://icerm.brown.edu/tw12-5-rcem \end_layout \end_inset \end_layout \begin_layout Standard \align center \begin_inset Graphics filename fig/icerm_repro_1212.png lyxscale 50 height 80theight% \end_inset \end_layout \begin_layout EndFrame \end_layout \end_body \end_document